The source files are NxN weighted adjacency matrix of the PSI network.
N is the number of nodes in the network (N=192).
Each element i and j indicates the energy transfer value from column/chromophore i to row/chromophore j.
The PSI network is weighted and directed.
Each matrix file represents the PSI network at a specific cutoff distance (CD).
Here below the identities of the nodes/chromophores
P700: reaction center special chlorophyll pair associated to the PSI.
RED: red-shifted form of chlorophylls a, concentrated in the LHCI complex.
CLA: chlorophyll a molecules that do not belong to P700 or RED (PDB Ligand ID: CLA).
CHL: chlorophyll b molecules (PDB Ligand ID: CHL).
BCR: β-carotene
ZEX: β-carotene and derivated molecules
LUT: Lutein
XAT: Violaxanthin
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## NODES/CHROMOPHORES ID
Matrix_index Resname PDB_index
1 CHL 25833
2 CHL 26261
3 CHL 26900
4 CHL 26947
5 CHL 27050
6 CHL 27096
7 CHL 27348
8 CHL 28059
9 CHL 28907
10 CHL 28954
11 CHL 29070
12 CHL 29131
13 CLA 25395
14 CLA 25460
15 CLA 25506
16 CLA 25561
17 CLA 25691
18 CLA 25741
19 CLA 25787
20 CLA 25880
21 CLA 26006
22 CLA 26051
23 CLA 26443
24 CLA 26503
25 CLA 26555
26 CLA 26620
27 CLA 26740
28 CLA 26790
29 CLA 26850
30 CLA 27578
31 CLA 27633
32 CLA 27685
33 CLA 27740
34 CLA 27860
35 CLA 27910
36 CLA 27951
37 CLA 27999
38 CLA 28156
39 CLA 28202
40 CLA 28406
41 CLA 28466
42 CLA 28516
43 CLA 28581
44 CLA 28701
45 CLA 28751
46 CLA 28811
47 CLA 28857
48 CLA 29174
49 CLA 29448
50 CLA 29513
51 CLA 29578
52 CLA 29643
53 CLA 29708
54 CLA 29773
55 CLA 29833
56 CLA 29898
57 CLA 29963
58 CLA 30013
59 CLA 30078
60 CLA 30133
61 CLA 30198
62 CLA 30263
63 CLA 30308
64 CLA 30354
65 CLA 30419
66 CLA 30475
67 CLA 30540
68 CLA 30590
69 CLA 30655
70 CLA 30715
71 CLA 30775
72 CLA 30840
73 CLA 30905
74 CLA 30960
75 CLA 31025
76 CLA 31090
77 CLA 31155
78 CLA 31220
79 CLA 31285
80 CLA 31350
81 CLA 31415
82 CLA 31480
83 CLA 31535
84 CLA 31586
85 CLA 31651
86 CLA 31716
87 CLA 31781
88 CLA 31846
89 CLA 31911
90 CLA 32386
91 CLA 32451
92 CLA 32702
93 CLA 32767
94 CLA 32832
95 CLA 32897
96 CLA 32962
97 CLA 33027
98 CLA 33092
99 CLA 33157
100 CLA 33222
101 CLA 33282
102 CLA 33328
103 CLA 33393
104 CLA 33458
105 CLA 33513
106 CLA 33573
107 CLA 33638
108 CLA 33703
109 CLA 33768
110 CLA 33814
111 CLA 33879
112 CLA 33934
113 CLA 33999
114 CLA 34064
115 CLA 34129
116 CLA 34194
117 CLA 34259
118 CLA 34324
119 CLA 34389
120 CLA 34449
121 CLA 34507
122 CLA 34567
123 CLA 34622
124 CLA 34677
125 CLA 34742
126 CLA 34792
127 CLA 34857
128 CLA 34922
129 CLA 35616
130 CLA 35681
131 CLA 35869
132 CLA 35934
133 CLA 35989
134 CLA 36035
135 CLA 36328
136 CLA 36468
137 CLA 36533
138 CLA 36642
139 CLA 36857
140 CLA 36902
141 CLA 36962
142 CLA 36989
143 CLA 37056
144 CLA 37151
145 CLA 37201
146 CLA 37261
147 LUT 25306
148 LUT 25348
149 LUT 26331
150 LUT 27428
151 LUT 27470
152 LUT 28334
153 LUT 36829
154 XAT 26373
155 XAT 28376
156 BCR 26421
157 BCR 27516
158 BCR 27556
159 BCR 28298
160 BCR 32155
161 BCR 32195
162 BCR 32235
163 BCR 32275
164 BCR 32315
165 BCR 32534
166 BCR 32615
167 BCR 35244
168 BCR 35284
169 BCR 35324
170 BCR 35364
171 BCR 35404
172 BCR 35536
173 BCR 35847
174 BCR 36118
175 BCR 36406
176 BCR 36446
177 BCR 36793
178 BCR 37034
179 BCR 37129
180 BCR 37329
181 BCR 37369
182 ZEX 35596
183 P700 32637
184 P700 29383
185 RED 25626
186 RED 25945
187 RED 26685
188 RED 26995
189 RED 27805
190 RED 28106
191 RED 28641
192 RED 29005